Index

_

__doc__ (in module argweavers) __getitem__() (argweavers.argweavers.Sites method)

__post_init__() (argweavers.smc.SMC.Tree method) __version__ (in module argweavers)

A

ARG (class in argweavers.arg) argweavers module argweavers.arg module argweavers.argweavers module argweavers.bin module argweavers.io module

argweavers.io.bed module argweavers.plot module argweavers.r module argweavers.smc module argweavers.utils module

C

chrom (argweavers.argweavers.Sites attribute) (argweavers.smc.SMC attribute)

cnode (argweavers.smc.SMC.SPR attribute) ctime (argweavers.smc.SMC.SPR attribute)

D

data (argweavers.argweavers.Sites attribute)

E

end (argweavers.argweavers.Sites attribute) (argweavers.smc.SMC attribute) (argweavers.smc.SMC.Tree attribute)

F

from_path() (argweavers.arg.ARG class method) (argweavers.smc.SMC class method)

G

G (argweavers.arg.ARG attribute)

M

module argweavers argweavers.arg argweavers.argweavers argweavers.bin argweavers.io argweavers.io.bed argweavers.plot argweavers.r argweavers.smc argweavers.utils

N

names (argweavers.smc.SMC attribute)

newick (argweavers.smc.SMC.Tree attribute)

P

parse_newick() (in module argweavers.utils) parse_nhx() (in module argweavers.utils) parse_region() (in module argweavers.utils)

plot_tree() (in module argweavers.plot) plotTreesFromBed() (in module argweavers.r) pos (argweavers.smc.SMC.SPR attribute)

R

read_bed() (in module argweavers.io) (in module argweavers.io.bed) read_sites() (in module argweavers.argweavers)

require_executable() (in module argweavers.bin) rnode (argweavers.smc.SMC.SPR attribute) rtime (argweavers.smc.SMC.SPR attribute)

S

sequence_length (argweavers.arg.ARG property) Sites (class in argweavers.argweavers) SMC (class in argweavers.smc) SMC.SPR (class in argweavers.smc) SMC.Tree (class in argweavers.smc)

smc2bed() (in module argweavers.argweavers) sprs (argweavers.smc.SMC attribute) start (argweavers.argweavers.Sites attribute) (argweavers.smc.SMC attribute) (argweavers.smc.SMC.Tree attribute) subset_bed() (in module argweavers.io)

T

to_arg() (argweavers.smc.SMC method)

to_ts() (argweavers.arg.ARG method) trees (argweavers.smc.SMC attribute)