R API Reference¶
This page contains auto-generated API reference documentation [1] and with a little bit of manual editing to make it more readable.
argweaverdrawTreegetColsgetHapsgetLogFilegetOuterPopPathgetPathsFromLogFilegetRootNodegetTimesgetTimesFromLogFilegetTreeDepthmakeTransparentmeanColormultiHistmultiPopsizeFileFromPsmcplotBwplotLeafTraceplotPsmcplotSitesplotStatsplotTracesplotTreeplotTreesplotTreesAtSitesplotTreesFromBedpostorder.argpostorderRecprobCoalCountspsmcToPopsizereadArgSummaryreadLeafTracereadPopFilereadPopModelreadPsmcreadSitesreadStatsFilescalePopModelsubSiteswriteSites
This directory contains an R package to aid plotting ARGweaver results
To install the package, use
R -e "renv::restore()"
in the project root directory.
Some functions require the packages “ape” or “rphast” to be installed as well. All of them are included in the renv.lock