`plotPsmc`¶

Plot PSMC output file

Description¶

Plot PSMC output file

Usage¶

plotPsmc(psmcFile, mu = 1.4e-08, s = 100, sampleAge = 0,
  add = FALSE, timeScale = 1, xlim = NULL, ylim = NULL,
  xlab = "Time", ylab = "Popsize", log = "x", ...)

Arguments¶

Argument	Description
`psmcFile`	file name containing PSMC output
`mu`	Mutation rate per base pair per generation
`s`	The site compression rate used in PSMC
`sampleAge`	(For ancient samples) the sample age, in generations
`add`	If TRUE, add to current plotting device
`timeScale`	Scale all times by this factor (i.e. to convert generations to years)
`xlim`	x-axis range. If NULL, use range in data
`ylim`	y-axis range. If NULL, use range in data
`xlab`	x-axis label
`ylab`	y-axis label
`log`	Which axis to use log scale for (either “x”, “y”, “xy”, “n”)
`...`	Other arguments to be passed to “segments” function (col, lty, lwd, etc)