argweaver¶

Process/Plot ARGweaver results in R. Reads and displays results from command line programs arg-sample and arg-summarize.

Functions¶

  • drawTree
  • getCols
  • getHaps
  • getLogFile
  • getOuterPopPath
  • getPathsFromLogFile
  • getRootNode
  • getTimes
  • getTimesFromLogFile
  • getTreeDepth
  • makeTransparent
  • meanColor
  • multiHist
  • multiPopsizeFileFromPsmc
  • plotBw
  • plotLeafTrace
  • plotPsmc
  • plotSites
  • plotStats
  • plotTraces
  • plotTree
  • plotTrees
  • plotTreesAtSites
  • plotTreesFromBed
  • postorder.arg
  • postorderRec
  • probCoalCounts
  • psmcToPopsize
  • readArgSummary
  • readLeafTrace
  • readPopFile
  • readPopModel
  • readPsmc
  • readSites
  • readStatsFile
  • scalePopModel
  • subSites
  • writeSites

argweavers

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  • Installation
  • API Reference
  • R API Reference

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  • Documentation overview
    • R API Reference
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