argweaver
¶
Process/Plot ARGweaver results in R. Reads and displays results from command line programs arg-sample and arg-summarize.
Functions¶
drawTree
getCols
getHaps
getLogFile
getOuterPopPath
getPathsFromLogFile
getRootNode
getTimes
getTimesFromLogFile
getTreeDepth
makeTransparent
meanColor
multiHist
multiPopsizeFileFromPsmc
plotBw
plotLeafTrace
plotPsmc
plotSites
plotStats
plotTraces
plotTree
plotTrees
plotTreesAtSites
plotTreesFromBed
postorder.arg
postorderRec
probCoalCounts
psmcToPopsize
readArgSummary
readLeafTrace
readPopFile
readPopModel
readPsmc
readSites
readStatsFile
scalePopModel
subSites
writeSites