`drawTree`¶

Draw a tree from a newick string; add to current plot

Description¶

Draw a tree from a newick string; add to current plot

Usage¶

drawTree(tree, col = "black", lwd = 1, timeScale = 1,
  call.plotSpr = FALSE, cex.leafname = 2, leafCol = col,
  leafLabels = NULL, mod = NULL)

Arguments¶

Argument	Description
`tree`	A newick string representing a tree
`col`	Either a character string (single value) giving color of tree. Or, a list giving color to plot each leaf branch. Internal branches will be plotted as “average” color among child leafs.
`lwd`	Line width
`timeScale`	multiply all branches by this value
`call.plotSpr`	If TRUE and if a SPR event is encoded in the tree (with NHX tags), then draw the SPR event on the tree (currently only works if mod is not NULL)
`cex.leafname`	Character size of leaf names
`leafCol`	If given, this can be a list assigning a color to each leaf name (individual names also work if haploid names are in the form indName_1 and indName_2)
`leafLabels`	A list indexed by the leaf names in the tree, giving the label to display for each leaf name. If NULL, the leaf names are displayed.
`mod`	(Advanced; for use with multi-population version of ARGweaver) A model file read in with the function readPopModel, will draw population model underneath tree

Seealso¶

plotTrees for function which creates a new plot

Note¶

The parameters col, leafCol, and leafLabels should all be lists indexed by leaf names of the tree. However, they can also be diploid individual names, if the leafs are named with the convention indName_1 and indName_2