readPsmc

Read a PSMC output file

Description

Read a PSMC output file

Usage

readPsmc(psmcFile, mu = 1.4e-08, s = 100, sampleAge = 0)

Arguments

Argument	Description
psmcFile	file name containing PSMC output
mu	Mutation rate per base pair per generation
s	The site compression rate used in PSMC
sampleAge	(For ancient samples) the sample age, in generations

Value

A data frame containing fields minTime, maxTime, popsize. MinTime and MaxTime are in generations and will be adjusted by sampleAge