readSites

Read an ARGweaver sites file

Description

Read an ARGweaver sites file

Usage

readSites(file, readProbs = FALSE)

Arguments

Argument	Description
file	Sites file (may be gzipped. may NOT be streamed)
readProbs	If TRUE, return genotype probabilities as well (if they are in encoded in the file)

Value

a list with two elements: one describing the region, and the other a data frame with a column for each haploid genome and a row for each variant site. A third element “probs” will be added if readProbs=TRUE